The main changes in this release, in addition to
the usual round of bugfixes, are the support in
Gap4 for very large databases (64-bit file sizes),
support for traces from the "454" instrument, and
support for a new SNP Candidates plot, allowing
visualization of likely SNPs or collapsed repeats
and tools to split these into their constituent
haplotypes. In addition, substantial speed
improvements have been made.
Primarily Gap4 changes. This includes new plots and search functions designed to highlight sequence variations (or misassemblies), template status improvements, and a multitude of more minor adjustments and bugfixes.
