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base: コミット

This repository is a base of Eos.


コミットメタ情報

リビジョン3004b98b593336b63a95e48d49bd4b2987deaa00 (tree)
日時2015-01-10 09:47:57
作者Takuo Yasunaga <yasunaga@bio....>
コミッターTakuo Yasunaga

ログメッセージ

New Tool:
new file: bin/mrcImageMeanFreePathCalc

変更サマリ

差分

--- /dev/null
+++ b/bin/mrcImageMeanFreePathCalc
@@ -0,0 +1 @@
1+../sbin/MachineIndependent
\ No newline at end of file
--- a/bin/wish/Display2/tclIndex
+++ b/bin/wish/Display2/tclIndex
@@ -49,6 +49,7 @@ set auto_index(menuMultiRoiOKCommand) [list source [file join $dir Display2MenuR
4949 set auto_index(menuMultiRoiAllDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
5050 set auto_index(menuMultiRoiDeleteCommand) [list source [file join $dir Display2MenuROI.wish]]
5151 set auto_index(menuEditCreate) [list source [file join $dir Display2MenuROI.wish]]
52+set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
5253 set auto_index(layerLineRecreate) [list source [file join $dir LayerLineUtil.wish]]
5354 set auto_index(layerLineCreate) [list source [file join $dir LayerLineUtil.wish]]
5455 set auto_index(layerLineClear) [list source [file join $dir LayerLineUtil.wish]]
@@ -131,4 +132,3 @@ set auto_index(sectionClearAll) [list source [file join $dir SectionUtil.wish]]
131132 set auto_index(sectionClear) [list source [file join $dir SectionUtil.wish]]
132133 set auto_index(sectionChange) [list source [file join $dir SectionUtil.wish]]
133134 set auto_index(unitCellRecreate) [list source [file join $dir UnitCell.wish]]
134-set auto_index(fft2dCmd) [list source [file join $dir fft2dCmd.wish]]
Binary files /dev/null and b/hostdepend/X86MAC64/bin/X86MAC64/mrcImageMeanFreePathCalc differ
--- /dev/null
+++ b/hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64/.Depend
@@ -0,0 +1,158 @@
1+argCheck.o: argCheck.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
2+ /usr/include/sys/_symbol_aliasing.h \
3+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
4+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
5+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
6+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
7+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
8+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
9+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
10+ /usr/include/stdlib.h /usr/include/sys/wait.h \
11+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
12+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
13+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
14+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
15+ /usr/include/mach/i386/_structs.h \
16+ /usr/include/sys/_types/_sigaltstack.h \
17+ /usr/include/sys/_types/_ucontext.h \
18+ /usr/include/sys/_types/_pthread_attr_t.h \
19+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
20+ /usr/include/sys/resource.h \
21+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
22+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
23+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
24+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
25+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
26+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
27+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
28+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
29+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
30+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
31+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
32+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
33+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
34+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
35+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
36+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
37+ ../inc/../inc/mrcImageMeanFreePathCalc.h \
38+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
39+ /Users/tacyas/Eos/include/Memory.h \
40+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
41+ /usr/include/limits.h /usr/include/machine/limits.h \
42+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
43+ /usr/include/sys/syslimits.h
44+init.o: init.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
45+ /usr/include/sys/_symbol_aliasing.h \
46+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
47+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
48+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
49+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
50+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
51+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
52+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
53+ /usr/include/stdlib.h /usr/include/sys/wait.h \
54+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
55+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
56+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
57+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
58+ /usr/include/mach/i386/_structs.h \
59+ /usr/include/sys/_types/_sigaltstack.h \
60+ /usr/include/sys/_types/_ucontext.h \
61+ /usr/include/sys/_types/_pthread_attr_t.h \
62+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
63+ /usr/include/sys/resource.h \
64+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
65+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
66+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
67+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
68+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
69+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
70+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
71+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
72+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
73+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
74+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
75+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
76+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
77+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
78+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
79+ /Users/tacyas/Eos/include/string.h /usr/include/math.h ../inc/config.h \
80+ ../inc/../inc/mrcImageMeanFreePathCalc.h \
81+ /Users/tacyas/Eos/include/genUtil.h /Users/tacyas/Eos/include/File.h \
82+ /Users/tacyas/Eos/include/Memory.h \
83+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/limits.h \
84+ /usr/include/limits.h /usr/include/machine/limits.h \
85+ /usr/include/i386/limits.h /usr/include/i386/_limits.h \
86+ /usr/include/sys/syslimits.h
87+usage.o: usage.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
88+ /usr/include/sys/_symbol_aliasing.h \
89+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
90+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
91+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
92+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
93+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
94+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
95+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
96+ /usr/include/stdlib.h /usr/include/sys/wait.h \
97+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
98+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
99+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
100+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
101+ /usr/include/mach/i386/_structs.h \
102+ /usr/include/sys/_types/_sigaltstack.h \
103+ /usr/include/sys/_types/_ucontext.h \
104+ /usr/include/sys/_types/_pthread_attr_t.h \
105+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
106+ /usr/include/sys/resource.h \
107+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
108+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
109+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
110+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
111+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
112+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
113+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
114+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
115+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
116+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
117+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
118+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
119+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
120+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
121+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
122+ ../inc/config.h ../inc/../inc/mrcImageMeanFreePathCalc.h
123+util.o: util.c /usr/include/stdio.h /usr/include/sys/cdefs.h \
124+ /usr/include/sys/_symbol_aliasing.h \
125+ /usr/include/sys/_posix_availability.h /usr/include/Availability.h \
126+ /usr/include/AvailabilityInternal.h /usr/include/_types.h \
127+ /usr/include/sys/_types.h /usr/include/machine/_types.h \
128+ /usr/include/i386/_types.h /usr/include/sys/_types/_va_list.h \
129+ /usr/include/sys/_types/_size_t.h /usr/include/sys/_types/_null.h \
130+ /usr/include/sys/_types/_off_t.h /usr/include/sys/_types/_ssize_t.h \
131+ /usr/include/secure/_stdio.h /usr/include/secure/_common.h \
132+ /usr/include/stdlib.h /usr/include/sys/wait.h \
133+ /usr/include/sys/_types/_pid_t.h /usr/include/sys/_types/_id_t.h \
134+ /usr/include/sys/signal.h /usr/include/sys/appleapiopts.h \
135+ /usr/include/machine/signal.h /usr/include/i386/signal.h \
136+ /usr/include/machine/_mcontext.h /usr/include/i386/_mcontext.h \
137+ /usr/include/mach/i386/_structs.h \
138+ /usr/include/sys/_types/_sigaltstack.h \
139+ /usr/include/sys/_types/_ucontext.h \
140+ /usr/include/sys/_types/_pthread_attr_t.h \
141+ /usr/include/sys/_types/_sigset_t.h /usr/include/sys/_types/_uid_t.h \
142+ /usr/include/sys/resource.h \
143+ /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.0/include/stdint.h \
144+ /usr/include/stdint.h /usr/include/sys/_types/_int8_t.h \
145+ /usr/include/sys/_types/_int16_t.h /usr/include/sys/_types/_int32_t.h \
146+ /usr/include/sys/_types/_int64_t.h /usr/include/_types/_uint8_t.h \
147+ /usr/include/_types/_uint16_t.h /usr/include/_types/_uint32_t.h \
148+ /usr/include/_types/_uint64_t.h /usr/include/sys/_types/_intptr_t.h \
149+ /usr/include/sys/_types/_uintptr_t.h /usr/include/_types/_intmax_t.h \
150+ /usr/include/_types/_uintmax_t.h /usr/include/sys/_types/_timeval.h \
151+ /usr/include/machine/endian.h /usr/include/i386/endian.h \
152+ /usr/include/sys/_endian.h /usr/include/libkern/_OSByteOrder.h \
153+ /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
154+ /usr/include/sys/_types/_ct_rune_t.h /usr/include/sys/_types/_rune_t.h \
155+ /usr/include/sys/_types/_wchar_t.h /usr/include/machine/types.h \
156+ /usr/include/i386/types.h /usr/include/sys/_types/___offsetof.h \
157+ /usr/include/sys/_types/_dev_t.h /usr/include/sys/_types/_mode_t.h \
158+ ../inc/config.h ../inc/../inc/mrcImageMeanFreePathCalc.h
--- /dev/null
+++ b/hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64/Makefile
@@ -0,0 +1,114 @@
1+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Define.inc
2+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/Config/Define.inc
3+include $(EOS_HOME)/src/$(WORLDNAME)/Config/Define.inc
4+include $(EOS_HOME)/src/Config/DefineTool.inc
5+
6+LIBFILES = \
7+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
8+
9+LIBFILESDEBUG = \
10+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
11+
12+SRCC = \
13+ $(OBJECTNAME).c \
14+ init.c \
15+ argCheck.c \
16+ usage.c \
17+ util.c
18+
19+SRCCXX = \
20+ $(OBJECTNAME).cc \
21+ init.cc \
22+ argCheck.cc \
23+ usage.cc \
24+ util.cc
25+
26+MODULES = \
27+ $(OBJECTNAME).o \
28+ init.o \
29+ argCheck.o \
30+ usage.o \
31+ util.o
32+
33+REALMODULES = \
34+ $(OSTYPE)/$(OBJECTNAME).o \
35+ $(OSTYPE)/init.o \
36+ $(OSTYPE)/argCheck.o \
37+ $(OSTYPE)/usage.o \
38+ $(OSTYPE)/util.o
39+
40+MODULESDEBUG = \
41+ $(OBJECTNAME).debugo \
42+ init.debugo \
43+ argCheck.debugo \
44+ usage.debugo \
45+ util.debugo
46+
47+MODULESCUDAGDB = \
48+ $(OBJECTNAME).cudagdb.o \
49+ init.cudagdb.o \
50+ argCheck.cudagdb.o \
51+ usage.cudagdb.o \
52+ util.cudagdb.o
53+
54+REALMODULESDEBUG = \
55+ $(OSTYPE)/$(OBJECTNAME).debugo \
56+ $(OSTYPE)/init.debugo \
57+ $(OSTYPE)/argCheck.debugo \
58+ $(OSTYPE)/usage.debugo \
59+ $(OSTYPE)/util.debugo
60+
61+
62+$(OBJECTNAME): $(MODULES) $(LIBFILES)
63+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
64+ then \
65+ echo $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
66+ $(CC) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
67+ fi
68+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
69+ then \
70+ echo $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
71+ $(CXX) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
72+ fi
73+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
74+ then \
75+ echo "MICO"; \
76+ echo $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
77+ $(MICOLD) $(CCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
78+ fi
79+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
80+ then \
81+ echo $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
82+ $(NVCC) $(NVCCOPTS) $(MODULES) $(LIBFILES) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) $(CUDALIB) $(CUDAINC) -o $@ ; \
83+ fi
84+
85+
86+$(OBJECTNAME).debug: $(MODULESDEBUG) $(LIBFILESDEBUG)
87+ @if [ -f $(VPATH)/$(OBJECTNAME).c ] ; \
88+ then \
89+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
90+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
91+ fi
92+ @if [ -f $(VPATH)/$(OBJECTNAME).cc ] ; \
93+ then \
94+ echo $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
95+ $(CXX) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
96+ fi
97+ @if [ -f $(VPATH)/$(OBJECTNAME).ccm ] ; \
98+ then \
99+ echo "MICO"; \
100+ echo $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
101+ $(MICOLD) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
102+ fi
103+ @if [ -f $(VPATH)/$(OBJECTNAME).cu ] ; \
104+ then \
105+ echo $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
106+ $(CC) $(CCOPTSDEBUG) $(MODULESDEBUG) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@ ; \
107+ fi
108+
109+$(OBJECTNAME).cudagdb: $(MODULESCUDAGDB) $(LIBFILESDEBUG)
110+ echo $(NVCC) "$(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@"
111+ $(NVCC) $(NVCCOPTSCUDAGDB) $(MODULESCUDAGDB) $(LIBFILESDEBUG) $(EXTRA_LIB) $(KHOROS_LIBS) $(LIBPVM) $(STANDARDLIB) $(HOSTDEPENDENTLIB) -o $@
112+
113+include ./.Depend
114+include $(EOS_HOME)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config/Target.inc
--- /dev/null
+++ b/hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64/X86MAC64
@@ -0,0 +1 @@
1+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64
\ No newline at end of file
Binary files /dev/null and b/hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64/mrcImageMeanFreePathCalc differ
--- a/lib/tclIndex
+++ b/lib/tclIndex
@@ -6,75 +6,6 @@
66 # element name is the name of a command and the value is
77 # a script that loads the command.
88
9-set auto_index(fileSaveSureWin) [list source [file join $dir fileSave.wish]]
10-set auto_index(fileSaveSureOK) [list source [file join $dir fileSave.wish]]
11-set auto_index(fileSaveSureCancel) [list source [file join $dir fileSave.wish]]
12-set auto_index(fileSaveSureWinResources) [list source [file join $dir fileSave.wish]]
13-set auto_index(fileSave) [list source [file join $dir fileSave.wish]]
14-set auto_index(fileSaveResources) [list source [file join $dir fileSave.wish]]
15-set auto_index(fileSaveBindings) [list source [file join $dir fileSave.wish]]
16-set auto_index(fileSaveList) [list source [file join $dir fileSave.wish]]
17-set auto_index(fileSaveOK) [list source [file join $dir fileSave.wish]]
18-set auto_index(fileSaveCancel) [list source [file join $dir fileSave.wish]]
19-set auto_index(fileSaveClick) [list source [file join $dir fileSave.wish]]
20-set auto_index(fileSaveTake) [list source [file join $dir fileSave.wish]]
21-set auto_index(fileSaveComplete) [list source [file join $dir fileSave.wish]]
22-set auto_index(fileSelect) [list source [file join $dir fileSelect.wish]]
23-set auto_index(fileSelectResources) [list source [file join $dir fileSelect.wish]]
24-set auto_index(fileSelectBindings) [list source [file join $dir fileSelect.wish]]
25-set auto_index(fileSelectList) [list source [file join $dir fileSelect.wish]]
26-set auto_index(fileSelectOK) [list source [file join $dir fileSelect.wish]]
27-set auto_index(fileSelectCancel) [list source [file join $dir fileSelect.wish]]
28-set auto_index(fileSelectClick) [list source [file join $dir fileSelect.wish]]
29-set auto_index(fileSelectTake) [list source [file join $dir fileSelect.wish]]
30-set auto_index(fileSelectComplete) [list source [file join $dir fileSelect.wish]]
31-set auto_index(colormapSet) [list source [file join $dir Colormap.wish]]
32-set auto_index(seqFileTemplateChange) [list source [file join $dir seqFileSelect.wish]]
33-set auto_index(seqFileSelect) [list source [file join $dir seqFileSelect.wish]]
34-set auto_index(seqFileSelectBindings) [list source [file join $dir seqFileSelect.wish]]
35-set auto_index(seqFileSelectList) [list source [file join $dir seqFileSelect.wish]]
36-set auto_index(seqFileTemplateSelectOK) [list source [file join $dir seqFileSelect.wish]]
37-set auto_index(seqFileTemplateSelectComplete) [list source [file join $dir seqFileSelect.wish]]
38-set auto_index(seqFileSelectOK) [list source [file join $dir seqFileSelect.wish]]
39-set auto_index(seqFileSelectComplete) [list source [file join $dir seqFileSelect.wish]]
40-set auto_index(seqFileSelectPrev) [list source [file join $dir seqFileSelect.wish]]
41-set auto_index(seqFileSelectNext) [list source [file join $dir seqFileSelect.wish]]
42-set auto_index(seqFileSelectCancel) [list source [file join $dir seqFileSelect.wish]]
43-set auto_index(seqFileSelectClick) [list source [file join $dir seqFileSelect.wish]]
44-set auto_index(seqFileSelectTake) [list source [file join $dir seqFileSelect.wish]]
45-set auto_index(CheckButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
46-set auto_index(RadioButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
47-set auto_index(RadioButtonsCreateWithPackWithCommand) [list source [file join $dir VariousButton.wish]]
48-set auto_index(RadioButtonsCreate) [list source [file join $dir VariousButton.wish]]
49-set auto_index(CheckButtonsCreate) [list source [file join $dir VariousButton.wish]]
50-set auto_index(CommandEntry) [list source [file join $dir CommandEntry.wish]]
51-set auto_index(CommandEntryWithSelection) [list source [file join $dir CommandEntry.wish]]
52-set auto_index(CommandEntryWithSelectionEntrySet) [list source [file join $dir CommandEntry.wish]]
53-set auto_index(CommandEntryWithUpDown) [list source [file join $dir CommandEntry.wish]]
54-set auto_index(CommandEntryWithUpDownUp) [list source [file join $dir CommandEntry.wish]]
55-set auto_index(CommandEntryWithUpDownDown) [list source [file join $dir CommandEntry.wish]]
56-set auto_index(bltResetBindings) [list source [file join $dir graphFeature.wish]]
57-set auto_index(bltActivateLegend) [list source [file join $dir graphFeature.wish]]
58-set auto_index(SetActiveLegend) [list source [file join $dir graphFeature.wish]]
59-set auto_index(SetCrosshairs) [list source [file join $dir graphFeature.wish]]
60-set auto_index(bltFindElement) [list source [file join $dir graphFeature.wish]]
61-set auto_index(bltFlashPoint) [list source [file join $dir graphFeature.wish]]
62-set auto_index(SetClosestPoint) [list source [file join $dir graphFeature.wish]]
63-set auto_index(bltGetCoords) [list source [file join $dir graphFeature.wish]]
64-set auto_index(bltGetAnchor) [list source [file join $dir graphFeature.wish]]
65-set auto_index(bltGetAnchorX) [list source [file join $dir graphFeature.wish]]
66-set auto_index(bltBox) [list source [file join $dir graphFeature.wish]]
67-set auto_index(bltBoxX) [list source [file join $dir graphFeature.wish]]
68-set auto_index(bltScan) [list source [file join $dir graphFeature.wish]]
69-set auto_index(bltScanX) [list source [file join $dir graphFeature.wish]]
70-set auto_index(bltZoom) [list source [file join $dir graphFeature.wish]]
71-set auto_index(bltZoomX) [list source [file join $dir graphFeature.wish]]
72-set auto_index(SetZoom) [list source [file join $dir graphFeature.wish]]
73-set auto_index(SetZoomX) [list source [file join $dir graphFeature.wish]]
74-set auto_index(SetPrint) [list source [file join $dir graphFeature.wish]]
75-set auto_index(NotSupportedCommand) [list source [file join $dir tclUtil.wish]]
76-set auto_index(Canvas) [list source [file join $dir Canvas.wish]]
77-set auto_index(scrolledCanvas) [list source [file join $dir Canvas.wish]]
789 set auto_index(Blt_ActiveLegend) [list source [file join $dir bltGraph.wish]]
7910 set auto_index(Blt_Crosshairs) [list source [file join $dir bltGraph.wish]]
8011 set auto_index(Blt_ZoomStack) [list source [file join $dir bltGraph.wish]]
@@ -102,8 +33,16 @@ set auto_index(::blt::SetZoomPoint) [list source [file join $dir bltGraph.wish]]
10233 set auto_index(::blt::Box) [list source [file join $dir bltGraph.wish]]
10334 set auto_index(Blt_PostScriptDialog) [list source [file join $dir bltGraph.wish]]
10435 set auto_index(::blt::ResetPostScript) [list source [file join $dir bltGraph.wish]]
105-set auto_index(fileCanBeOverwritten) [list source [file join $dir fileUtil.wish]]
106-set auto_index(relativePathGet) [list source [file join $dir fileUtil.wish]]
36+set auto_index(Canvas) [list source [file join $dir Canvas.wish]]
37+set auto_index(scrolledCanvas) [list source [file join $dir Canvas.wish]]
38+set auto_index(colormapSet) [list source [file join $dir Colormap.wish]]
39+set auto_index(CommandEntry) [list source [file join $dir CommandEntry.wish]]
40+set auto_index(CommandEntryWithSelection) [list source [file join $dir CommandEntry.wish]]
41+set auto_index(CommandEntryWithSelectionEntrySet) [list source [file join $dir CommandEntry.wish]]
42+set auto_index(CommandEntryWithUpDown) [list source [file join $dir CommandEntry.wish]]
43+set auto_index(CommandEntryWithUpDownUp) [list source [file join $dir CommandEntry.wish]]
44+set auto_index(CommandEntryWithUpDownDown) [list source [file join $dir CommandEntry.wish]]
45+set auto_index(eosCommandExecute) [list source [file join $dir commandUtil.wish]]
10746 set auto_index(::CTF::Init) [list source [file join $dir ctfInfo.wish]]
10847 set auto_index(::CTF::Win) [list source [file join $dir ctfInfo.wish]]
10948 set auto_index(::CTF::ctfInfoGraphInfoFrameCreate) [list source [file join $dir ctfInfo.wish]]
@@ -135,4 +74,65 @@ set auto_index(::CTF::ctfInfoCTFCalculation) [list source [file join $dir ctfInf
13574 set auto_index(::CTF::ctfInfoScatteringCalc) [list source [file join $dir ctfInfo.wish]]
13675 set auto_index(::CTF::ctfInfoListGet) [list source [file join $dir ctfInfo.wish]]
13776 set auto_index(::CTF::ctfInfoAppend) [list source [file join $dir ctfInfo.wish]]
138-set auto_index(eosCommandExecute) [list source [file join $dir commandUtil.wish]]
77+set auto_index(fileSaveSureWin) [list source [file join $dir fileSave.wish]]
78+set auto_index(fileSaveSureOK) [list source [file join $dir fileSave.wish]]
79+set auto_index(fileSaveSureCancel) [list source [file join $dir fileSave.wish]]
80+set auto_index(fileSaveSureWinResources) [list source [file join $dir fileSave.wish]]
81+set auto_index(fileSave) [list source [file join $dir fileSave.wish]]
82+set auto_index(fileSaveResources) [list source [file join $dir fileSave.wish]]
83+set auto_index(fileSaveBindings) [list source [file join $dir fileSave.wish]]
84+set auto_index(fileSaveList) [list source [file join $dir fileSave.wish]]
85+set auto_index(fileSaveOK) [list source [file join $dir fileSave.wish]]
86+set auto_index(fileSaveCancel) [list source [file join $dir fileSave.wish]]
87+set auto_index(fileSaveClick) [list source [file join $dir fileSave.wish]]
88+set auto_index(fileSaveTake) [list source [file join $dir fileSave.wish]]
89+set auto_index(fileSaveComplete) [list source [file join $dir fileSave.wish]]
90+set auto_index(fileSelect) [list source [file join $dir fileSelect.wish]]
91+set auto_index(fileSelectResources) [list source [file join $dir fileSelect.wish]]
92+set auto_index(fileSelectBindings) [list source [file join $dir fileSelect.wish]]
93+set auto_index(fileSelectList) [list source [file join $dir fileSelect.wish]]
94+set auto_index(fileSelectOK) [list source [file join $dir fileSelect.wish]]
95+set auto_index(fileSelectCancel) [list source [file join $dir fileSelect.wish]]
96+set auto_index(fileSelectClick) [list source [file join $dir fileSelect.wish]]
97+set auto_index(fileSelectTake) [list source [file join $dir fileSelect.wish]]
98+set auto_index(fileSelectComplete) [list source [file join $dir fileSelect.wish]]
99+set auto_index(fileCanBeOverwritten) [list source [file join $dir fileUtil.wish]]
100+set auto_index(relativePathGet) [list source [file join $dir fileUtil.wish]]
101+set auto_index(bltResetBindings) [list source [file join $dir graphFeature.wish]]
102+set auto_index(bltActivateLegend) [list source [file join $dir graphFeature.wish]]
103+set auto_index(SetActiveLegend) [list source [file join $dir graphFeature.wish]]
104+set auto_index(SetCrosshairs) [list source [file join $dir graphFeature.wish]]
105+set auto_index(bltFindElement) [list source [file join $dir graphFeature.wish]]
106+set auto_index(bltFlashPoint) [list source [file join $dir graphFeature.wish]]
107+set auto_index(SetClosestPoint) [list source [file join $dir graphFeature.wish]]
108+set auto_index(bltGetCoords) [list source [file join $dir graphFeature.wish]]
109+set auto_index(bltGetAnchor) [list source [file join $dir graphFeature.wish]]
110+set auto_index(bltGetAnchorX) [list source [file join $dir graphFeature.wish]]
111+set auto_index(bltBox) [list source [file join $dir graphFeature.wish]]
112+set auto_index(bltBoxX) [list source [file join $dir graphFeature.wish]]
113+set auto_index(bltScan) [list source [file join $dir graphFeature.wish]]
114+set auto_index(bltScanX) [list source [file join $dir graphFeature.wish]]
115+set auto_index(bltZoom) [list source [file join $dir graphFeature.wish]]
116+set auto_index(bltZoomX) [list source [file join $dir graphFeature.wish]]
117+set auto_index(SetZoom) [list source [file join $dir graphFeature.wish]]
118+set auto_index(SetZoomX) [list source [file join $dir graphFeature.wish]]
119+set auto_index(SetPrint) [list source [file join $dir graphFeature.wish]]
120+set auto_index(seqFileTemplateChange) [list source [file join $dir seqFileSelect.wish]]
121+set auto_index(seqFileSelect) [list source [file join $dir seqFileSelect.wish]]
122+set auto_index(seqFileSelectBindings) [list source [file join $dir seqFileSelect.wish]]
123+set auto_index(seqFileSelectList) [list source [file join $dir seqFileSelect.wish]]
124+set auto_index(seqFileTemplateSelectOK) [list source [file join $dir seqFileSelect.wish]]
125+set auto_index(seqFileTemplateSelectComplete) [list source [file join $dir seqFileSelect.wish]]
126+set auto_index(seqFileSelectOK) [list source [file join $dir seqFileSelect.wish]]
127+set auto_index(seqFileSelectComplete) [list source [file join $dir seqFileSelect.wish]]
128+set auto_index(seqFileSelectPrev) [list source [file join $dir seqFileSelect.wish]]
129+set auto_index(seqFileSelectNext) [list source [file join $dir seqFileSelect.wish]]
130+set auto_index(seqFileSelectCancel) [list source [file join $dir seqFileSelect.wish]]
131+set auto_index(seqFileSelectClick) [list source [file join $dir seqFileSelect.wish]]
132+set auto_index(seqFileSelectTake) [list source [file join $dir seqFileSelect.wish]]
133+set auto_index(NotSupportedCommand) [list source [file join $dir tclUtil.wish]]
134+set auto_index(CheckButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
135+set auto_index(RadioButtonsCreateWithPack) [list source [file join $dir VariousButton.wish]]
136+set auto_index(RadioButtonsCreateWithPackWithCommand) [list source [file join $dir VariousButton.wish]]
137+set auto_index(RadioButtonsCreate) [list source [file join $dir VariousButton.wish]]
138+set auto_index(CheckButtonsCreate) [list source [file join $dir VariousButton.wish]]
--- a/src/Tools/Config/Define.inc
+++ b/src/Tools/Config/Define.inc
@@ -528,3 +528,5 @@ WORLDNAME=Tools
528528 WORLDNAME=Tools
529529 WORLDNAME=Tools
530530 WORLDNAME=Tools
531+WORLDNAME=Tools
532+WORLDNAME=Tools
--- a/src/Tools/Makefile
+++ /dev/null
@@ -1,5 +0,0 @@
1-include ../Config/Define.inc
2-include Config/Define.inc
3-include .Source
4-
5-include Config/Target.inc
--- /dev/null
+++ b/src/Tools/Makefile
@@ -0,0 +1 @@
1+/Users/tacyas/Eos/src/Config/Template/ToolsHomeTemplate.Dir/Makefile
\ No newline at end of file
--- a/src/Tools/mrcImage/.Source
+++ b/src/Tools/mrcImage/.Source
@@ -145,6 +145,7 @@ mrcImageMakeSphere \
145145 mrcImageMappingtoPdb \
146146 mrcImageMasking \
147147 mrcImageMaskingByImage \
148+mrcImageMeanFreePathCalc \
148149 mrcImageMergebyside \
149150 mrcImageMirroring \
150151 mrcImageModeChange \
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/Config/Define.inc
@@ -0,0 +1,4 @@
1+OBJECTNAME = mrcImageMeanFreePathCalc
2+EXTRA_LIB =
3+EXTRA_CCOPTS =
4+EXTRA_INC =
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/Config/OptionControlFile
@@ -0,0 +1,6 @@
1+# OptionControlFile
2+# FileFormat
3+"-i","-i[nput]","Input:mrcImage","Essential","1","1","In","inFile::mrcImage","NULL"
4+"-o","-o[utput]","Output:distribution","Optional","1","1","Out","outFile::ASCII","stdout"
5+"-c","-c[onfig]","ConfigurationFile","Optional","1","1","configFile","inFile","NULL"
6+"-m","-m[ode]","Mode","Optional","1","1","mode","Integer","0"
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/Makefile
@@ -0,0 +1,115 @@
1+include ../../../Config/Define.inc
2+include ../../Config/Define.inc
3+include ../Config/Define.inc
4+include Config/Define.inc
5+
6+all:
7+ cd src; make all; cd ..
8+
9+install:
10+ cd src; make install; cd ..
11+
12+
13+putSF:
14+ if [ -f private ] ; \
15+ then \
16+ echo "$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME) is private"; \
17+ else \
18+ cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE commit || cvs -z4 -d:ext:$$USER@$$EOS_SOURCEFORGE import src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME); \
19+ fi
20+
21+put:
22+ cd src; make put; cd ..
23+
24+clean:
25+ cd src; make clean; cd ..
26+
27+depend:
28+ cd src; make depend; cd ..
29+
30+check:
31+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
32+ echo making directory; \
33+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
34+ fi
35+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
36+ @$(RM) src/Makefile
37+ @echo "New src/Makefile"
38+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
39+ @cd src; touch $(OSTYPE)/.Depend; make depend
40+
41+update:
42+ @if [ ! -d $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) ] ; then \
43+ echo making directory; \
44+ mkdir -p $(EOS_HOME)/hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE); \
45+ fi
46+ ln -sf ../../../../../hostdepend/$(OSTYPE)/src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE) src/$(OSTYPE);
47+ @$(RM) src/Makefile
48+ @echo "New src/Makefile"
49+ @$(CP) ../../../Config/Template/$(WORLDNAME)Template.Dir/src/Makefile src/Makefile
50+ @cd src; touch $(OSTYPE)/.Depend; echo "Y" | make update
51+
52+cvsupdate::
53+ cvs -d $(EOS_CVSROOT) update -d
54+
55+cvscommit::
56+ cvs -d $(EOS_CVSROOT) commit
57+
58+backup:
59+ @cd ../../../..; \
60+ echo $(OBJECTNAME) ; \
61+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
62+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
63+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
64+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
65+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
66+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
67+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
68+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
69+ tar uvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
70+
71+backup-all:
72+ @cd ../../../..; \
73+ echo $(OBJECTNAME) ; \
74+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
75+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
76+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
77+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
78+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
79+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
80+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
81+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
82+ tar rvf ${EOS_HOME}/backup/EosBase.tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile
83+
84+distribute:
85+ cd ../../../..; \
86+ echo $(OBJECTNAME) ; \
87+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
88+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
89+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
90+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
91+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
92+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
93+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
94+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
95+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
96+ tar uvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
97+
98+distribute-all:
99+ @cd ../../../..; \
100+ echo $(OBJECTNAME) ; \
101+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Config ; \
102+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/Makefile ;\
103+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/.[A-z]* ; \
104+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/inc ; \
105+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/doc; \
106+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/wish; \
107+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/[A-z]*.[A-z]*; \
108+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/.[A-z]*; \
109+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/Makefile ; \
110+ tar rvf ${EOS_HOME}/distribute/src.$(OSTYPE).tar src/$(WORLDNAME)/$(CLASSNAME)/$(OBJECTNAME)/src/$(OSTYPE)
111+
112+eosintroduce:
113+ ${EOS_HOME}/sbin/eosintroduce ${WORLDNAME} ${CLASSNAME} ${OBJECTNAME} ./
114+
115+include Config/Target.inc
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/doc/Makefile
@@ -0,0 +1,2 @@
1+install:
2+ cd ../src; make install-doc; cd ../doc
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/inc/config.h
@@ -0,0 +1,6 @@
1+#ifndef CONFIG_H
2+#define CONFIG_H
3+
4+#include "../inc/mrcImageMeanFreePathCalc.h"
5+
6+#endif /* CONFIG_H */
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/inc/mrcImageMeanFreePathCalc.h
@@ -0,0 +1,46 @@
1+#ifndef MRCIMAGEMEANFREEPATHCALC_H
2+#define MRCIMAGEMEANFREEPATHCALC_H
3+#include <stdio.h>
4+#include <stdlib.h>
5+
6+#define OPTION_FLAG '-'
7+#define OPTION_FLAG_POS (0)
8+#define OPTION_POS (1)
9+
10+
11+
12+
13+typedef struct mrcImageMeanFreePathCalcInfo {
14+ long flagRedirect;
15+
16+ long flagIn;
17+ char* In;
18+ FILE* fptIn;
19+
20+ long flagOut;
21+ char* Out;
22+ FILE* fptOut;
23+
24+ long flagconfigFile;
25+ char* configFile;
26+ FILE* fptconfigFile;
27+
28+ long flagmode;
29+ long mode;
30+
31+} mrcImageMeanFreePathCalcInfo;
32+#ifdef __cplusplus
33+extern "C" {
34+#endif
35+extern void argCheck(mrcImageMeanFreePathCalcInfo* info, int argc, char* avgv[]);
36+extern void khorosInit(int argc, char* avgv[]);
37+extern void init0(mrcImageMeanFreePathCalcInfo* info);
38+extern void init1(mrcImageMeanFreePathCalcInfo* info);
39+extern void usage(char* usage);
40+extern void additionalUsage(void);
41+extern void htmlBeforeUsage(char* usage);
42+extern void htmlAfterUsage(char* usage);
43+#ifdef __cplusplus
44+};
45+#endif
46+#endif /* MRCIMAGEMEANFREEPATHCALC_H */
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/Makefile
@@ -0,0 +1,427 @@
1+include ../Config/Define.inc
2+include ../../Config/Define.inc
3+include ../../../Config/Define.inc
4+include ../../../../Config/Define.inc
5+
6+EOSHOME=../../../../../
7+DSTDIR=$(EOSHOME)/bin
8+DSTDOC=$(EOSHOME)/doc
9+DSTTAR=$(EOSHOME)/tar
10+
11+INCFILES =
12+
13+LIBFILES = \
14+ $(LIBPREFIX)EosObjects$(LIBSUFFIX)
15+
16+LIBFILESDEBUG = \
17+ $(LIBPREFIX)EosObjects.debug$(LIBSUFFIX)
18+
19+SRCC = \
20+ $(OBJECTNAME).c \
21+ init.c \
22+ argCheck.c \
23+ usage.c \
24+ util.c \
25+
26+SRCCXX = \
27+ $(OBJECTNAME).cc \
28+ init.cc \
29+ argCheck.cc \
30+ usage.cc \
31+ util.cc \
32+
33+MODULES = \
34+ $(OBJECTNAME).o \
35+ init.o \
36+ argCheck.o \
37+ usage.o \
38+ util.o \
39+
40+REALMODULES = \
41+ $(OSTYPE)/$(OBJECTNAME).o \
42+ $(OSTYPE)/init.o \
43+ $(OSTYPE)/argCheck.o \
44+ $(OSTYPE)/usage.o \
45+ $(OSTYPE)/util.o
46+
47+MODULESDEBUG = \
48+ $(OBJECTNAME).debugo \
49+ init.debugo \
50+ argCheck.debugo \
51+ usage.debugo \
52+ util.debugo \
53+
54+REALMODULESDEBUG = \
55+ $(OSTYPE)/$(OBJECTNAME).debugo \
56+ $(OSTYPE)/init.debugo \
57+ $(OSTYPE)/argCheck.debugo \
58+ $(OSTYPE)/usage.debugo \
59+ $(OSTYPE)/util.debugo
60+
61+
62+all: $(OSTYPE)/$(OBJECTNAME)
63+ if [ ! -L $(OSTYPE) ] ; then \
64+ moveHostdependent; \
65+ fi
66+
67+debug: $(OSTYPE)/$(OBJECTNAME).debug
68+
69+cudagdb: $(OSTYPE)/$(OBJECTNAME).cudagdb
70+
71+
72+$(OSTYPE)/$(OBJECTNAME)::
73+ @$(RM) -f $(OSTYPE)/Makefile ; \
74+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
75+ cd $(OSTYPE); \
76+ $(MAKE) $(OBJECTNAME) WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
77+
78+$(OSTYPE)/$(OBJECTNAME).debug::
79+ @$(RM) -f $(OSTYPE)/Makefile ; \
80+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
81+ cd $(OSTYPE); \
82+ $(MAKE) $(OBJECTNAME).debug WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
83+
84+$(OSTYPE)/$(OBJECTNAME).cudagdb::
85+ @$(RM) -f $(OSTYPE)/Makefile ; \
86+ $(CP) $(EOS_HOME)/src/Config/Template/$(WORLDNAME)Template.Dir/src/ARCH/Makefile $(OSTYPE)/Makefile ; \
87+ cd $(OSTYPE); \
88+ $(MAKE) $(OBJECTNAME).cudagdb WORLDNAME=$(WORLDNAME) CLASSNAME=$(CLASSNAME) OBJECTNAME=$(OBJECTNAME)
89+
90+cvsupdate::
91+ cvs -d $(EOS_CVSROOT) update -d
92+
93+cvscommit::
94+ cvs -d $(EOS_CVSROOT) commit
95+
96+edit:
97+ @if [ -r $(OBJECTNAME).c ]; \
98+ then \
99+ sccsEdit $(OBJECTNAME).c; \
100+ else \
101+ echo "Source files are already editable"; \
102+ fi
103+ @if [ -r wish/$(OBJECTNAME).wish ]; \
104+ then \
105+ cd wish; sccsEdit $(OBJECTNAME).wish; \
106+ else \
107+ echo "Source files (wish) are already editable."; \
108+ fi
109+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
110+ then \
111+ cd ruby; sccsEdit $(OBJECTNAME).rb; \
112+ else \
113+ echo "Source files (ruby) are already editable."; \
114+ fi
115+ @if [ -r perl/$(OBJECTNAME).pl ]; \
116+ then \
117+ cd perl; sccsEdit $(OBJECTNAME).pl ; \
118+ else \
119+ echo "Source files (perl) are already editable."; \
120+ fi
121+ @if [ -r ../Config/OptionControlFile ]; \
122+ then \
123+ cd ../Config; sccsEdit OptionControlFile; \
124+ else \
125+ echo "OptionControlFile are already editable."; \
126+ fi
127+
128+unedit:
129+ @if [ -w $(OBJECTNAME).c ]; \
130+ then \
131+ sccsUnedit $(OBJECTNAME).c; \
132+ else \
133+ echo "Source files are not editable"; \
134+ fi
135+ @if [ -w wish/$(OBJECTNAME).wish ]; \
136+ then \
137+ cd wish; sccsUnedit $(OBJECTNAME).wish; \
138+ else \
139+ echo "Source files (wish) are not editable."; \
140+ fi
141+ @if [ -w ruby/$(OBJECTNAME).rb]; \
142+ then \
143+ cd ruby; sccsUnedit $(OBJECTNAME).rb; \
144+ else \
145+ echo "Source files (ruby) are not editable."; \
146+ fi
147+ @if [ -w perl/$(OBJECTNAME).pl ]; \
148+ then \
149+ cd perl; sccsUnedit $(OBJECTNAME).pl ; \
150+ else \
151+ echo "Source files (ruby) are not editable."; \
152+ fi
153+ @if [ -w ../Config/OptionControlFile ]; \
154+ then \
155+ cd ../Config; sccsUnedit OptionControlFile; \
156+ else \
157+ echo "OptionControlFile are not editable."; \
158+ fi
159+
160+report:
161+ @if [ -r $(OBJECTNAME).c ]; \
162+ then \
163+ sccsReport $(OBJECTNAME).c; \
164+ else \
165+ echo "Source files are already editable"; \
166+ fi
167+ @if [ -r wish/$(OBJECTNAME).wish ]; \
168+ then \
169+ cd wish; sccsReport $(OBJECTNAME).wish; \
170+ else \
171+ echo "Source files (wish) are already editable."; \
172+ fi
173+ @if [ -r ruby/$(OBJECTNAME).rb ]; \
174+ then \
175+ cd ruby; sccsReport $(OBJECTNAME).rb; \
176+ else \
177+ echo "Source files (ruby) are already editable."; \
178+ fi
179+ @if [ -r perl/$(OBJECTNAME).pl ] ; \
180+ then \
181+ cd perl; sccsReport $(OBJECTNAME).pl ; \
182+ else \
183+ echo "Source files (perl) are already editable."; \
184+ fi
185+ @if [ -r ../Config/OptionControlFile ]; \
186+ then \
187+ cd ../Config; sccsReport OptionControlFile; \
188+ else \
189+ echo "OptionControlFile are already editable."; \
190+ fi
191+
192+clean :
193+ rm -f *.debugo $(OSTYPE)/*.debugo *.cudagdbo $(OSTYPE)/*.cudagdbo *.o $(OSTYPE)/*.o *.linkinfo $(OSTYPE)/*.linkinfo \
194+ $(OSTYPE)/$(OBJECTNAME) $(OSTYPE)/*.$(OSTYPE) \
195+ $(OSTYPE)/$(OBJECTNAME).debug $(OSTYPE)/*.$(OSTYPE).debug \
196+ $(OSTYPE)/$(OBJECTNAME).cudagdb $(OSTYPE)/*.$(OSTYPE).cudagdb \
197+ $(OSTYPE)/$(OBJECTNAME).linkinfo $(OSTYPE)/*.$(OSTYPE).linkinfo \
198+ *.bak *.$(OSTYPE) core
199+
200+install: install-bin install-doc install-wish install-ruby install-shell install-perl
201+ @if [ dummy$(KHOROS_KENGOBJ) != dummy ] ; \
202+ then \
203+ if [ -x $(KHOROS_KGENOBJ) ] ; \
204+ then \
205+ make install-khoros ; \
206+ fi; \
207+ fi
208+
209+install-bin:$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
210+
211+$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME):$(OSTYPE)/$(OBJECTNAME) $(DSTDIR)/$(OBJECTNAME)
212+ @echo ---- Installing to bin
213+ @echo $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME)
214+ @if [ ! -d $(DSTDIR)/$(OSTYPE) ]; \
215+ then \
216+ mkdir $(DSTDIR)/$(OSTYPE); \
217+ fi
218+ @if [ -x $(OSTYPE)/$(OBJECTNAME) ]; \
219+ then \
220+ echo "Compilation is complete"; \
221+ $(RM) -f $(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
222+ $(CD) $(OSTYPE); $(INSTALL) -m 555 $(OBJECTNAME) ../$(DSTDIR)/$(OSTYPE); \
223+ $(CHMOD) 555 ../$(DSTDIR)/$(OSTYPE)/$(OBJECTNAME); \
224+ else \
225+ echo "Compilation is incomplete. $(OBJECTNAME)"; \
226+ fi
227+ @echo ---- end of bin
228+
229+install-wish:
230+ @if [ -d wish ]; \
231+ then \
232+ echo "---- Tcl/Tk file Install"; \
233+ if [ ! -d $(DSTDIR)/wish/$(OBJECTNAME) ]; \
234+ then \
235+ mkdir $(DSTDIR)/wish/$(OBJECTNAME) ; \
236+ fi ; \
237+ $(CP) -f wish/* $(DSTDIR)/wish/$(OBJECTNAME); \
238+ $(CHMOD) 555 $(DSTDIR)/wish/$(OBJECTNAME)/* ;\
239+ touch $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
240+ $(CHMOD) 666 $(DSTDIR)/wish/$(OBJECTNAME)/tclIndex;\
241+ echo "---- Tcl/Tk file Installed";\
242+ fi
243+
244+install-ruby:
245+ @if [ -d ruby ]; \
246+ then \
247+ echo "---- Ruby/Tk file Install"; \
248+ if [ ! -d $(DSTDIR)/ruby/$(OBJECTNAME) ]; \
249+ then \
250+ mkdir $(DSTDIR)/ruby/$(OBJECTNAME) ; \
251+ fi ; \
252+ $(CP) -f ruby/* $(DSTDIR)/ruby/$(OBJECTNAME); \
253+ $(CHMOD) 555 $(DSTDIR)/ruby/$(OBJECTNAME)/* ; \
254+ echo "---- Ruby/Tk file Installed"; \
255+ fi
256+
257+install-perl:
258+ @if [ -d perl ]; \
259+ then \
260+ echo "---- Perl/Tk file Install"; \
261+ if [ ! -d $(DSTDIR)/perl/$(OBJECTNAME) ]; \
262+ then \
263+ mkdir $(DSTDIR)/perl/$(OBJECTNAME) ; \
264+ fi; \
265+ $(CP) -f perl/* $(DSTDIR)/perl/$(OBJECTNAME); \
266+ $(CHMOD) 555 $(DSTDIR)/perl/$(OBJECTNAME)/* ; \
267+ echo "---- Perl/Tk file Installed"; \
268+ fi
269+
270+install-shell:
271+ @if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
272+ then \
273+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
274+ fi
275+ @if [ -d shell ]; \
276+ then \
277+ echo "---- Shell file Install"; \
278+ if [ ! -d $(DSTDIR)/shell/$(OBJECTNAME) ]; \
279+ then \
280+ mkdir $(DSTDIR)/shell/$(OBJECTNAME) ; \
281+ fi ; \
282+ $(CP) -f shell/* $(DSTDIR)/shell/$(OBJECTNAME); \
283+ $(CHMOD) 555 $(DSTDIR)/shell/$(OBJECTNAME)/*; \
284+ echo "---- Shell file Installed"; \
285+ fi
286+
287+install-khoros:
288+ @echo Installing to khoros
289+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KGENOBJ) ]; \
290+ then \
291+ echo kgenobj;\
292+ $(KHOROS_KGENOBJ) -tb Eos -oname $(OBJECTNAME) -type script -pane -cantata true -cat Eos -subcat $(CLASSNAME) -description $(OBJECTNAME) -bname $(OBJECTNAME) -form -lang ksh ; \
293+ fi
294+ @if [ ! -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
295+ then \
296+ $(KHOROS_KSET) -tb Eos -oname $(OBJECTNAME) -icon $(OBJECTNAME) ; \
297+ fi
298+ @if [ -d ../../../../../objects/script/$(OBJECTNAME) -a -f $(KHOROS_KSET) ]; \
299+ then \
300+ $(CHMOD) -R 775 ../../../../../objects/script/$(OBJECTNAME) ; \
301+ if [ $? ] ; \
302+ then \
303+ echo "-- setting khoros ---" ; \
304+ if [ -d ../../../../../objects/script/$(OBJECTNAME)/uis/ ] ; \
305+ then \
306+ $(CD) ../../../../../objects/script/$(OBJECTNAME)/uis/ ; \
307+ $(RM) -f $(OBJECTNAME).pane ; \
308+ $(LN) -s ../../../../src/Tools/$(CLASSNAME)/$(OBJECTNAME)/src/$(OBJECTNAME).pane $(OBJECTNAME).pane; \
309+ $(CD) ../../ ; \
310+ $(CHMOD) -R 555 $(OBJECTNAME); \
311+ else \
312+ echo "../../../../../objects/script/$(OBJECTNAME)/uis/ does not exist."; \
313+ fi ; \
314+ else \
315+ echo "Failed !!: Cannot chage mode in installing $(OBJECTNAME) to khoros system"; \
316+ fi ; \
317+ echo "-- end of khoros-installing"; \
318+ fi
319+
320+install-doc: html
321+ @if [ ! -d $(DSTDOC)/SmallTools ]; \
322+ then \
323+ mkdir $(DSTDOC)/SmallTools ;\
324+ fi
325+ @if [ -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ]; \
326+ then \
327+ $(RM) -f $(DSTDOC)/SmallTools/$(OBJECTNAME).html ;\
328+ fi
329+ @$(CP) $(OBJECTNAME).html $(DSTDOC)/SmallTools/$(OBJECTNAME).html
330+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
331+ @if [ -f ../doc/*.html ]; \
332+ then \
333+ $(CP) ../doc/*.html $(DSTDOC)/SmallTools/ ;\
334+ fi
335+ @$(CHMOD) 444 $(DSTDOC)/SmallTools/$(OBJECTNAME).html
336+ @if [ -f $(DSTDOC)/SmallTools/Makefile ]; \
337+ then \
338+ cd $(DSTDOC)/SmallTools; $(MAKE); \
339+ fi
340+
341+html: $(OBJECTNAME).html
342+
343+configFileRead:
344+ @ctrl2configFileRead $(CLASSNAME) $(OBJECTNAME) ../Config/OptionControlFile
345+
346+$(OBJECTNAME).html: $(OSTYPE)/$(OBJECTNAME)
347+ @echo creating html
348+ @$(OSTYPE)/$(OBJECTNAME) -html 2> $(OBJECTNAME).html.tmp
349+ @sed -e s/$(OSTYPE)\\/// $(OBJECTNAME).html.tmp > $(OBJECTNAME).html
350+ @$(RM) $(OBJECTNAME).html.tmp
351+
352+$(DSTDIR)/$(OBJECTNAME): $(OSTYPE)/$(OBJECTNAME)
353+ @ln -s -f ../sbin/MachineIndependent $@
354+
355+depend::
356+ @echo dependency checking now
357+ @if [ ! -L $(OSTYPE) ] ; then \
358+ moveHostdependent; \
359+ fi
360+ rm -f $(OSTYPE)/.Depend
361+ #echo C
362+ @if [ -f $(OBJECTNAME).c ] ; \
363+ then \
364+ echo "dependency: *.c"; \
365+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c ; \
366+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) *.c >> $(OSTYPE)/.Depend ; \
367+ fi
368+ #echo CC
369+ @if [ -f $(OBJECTNAME).cc ] ; \
370+ then \
371+ echo "dependency: *.cc"; \
372+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc ; \
373+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cc >> $(OSTYPE)/.Depend ; \
374+ fi
375+ @if [ -f $(OBJECTNAME).ccm ] ; \
376+ then \
377+ echo "dependency: *.ccm"; \
378+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm ; \
379+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.ccm >> $(OSTYPE)/.Depend ; \
380+ fi
381+ @if [ -f $(OBJECTNAME).cu ] ; \
382+ then \
383+ echo "dependency: *.cu"; \
384+ echo $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu ; \
385+ $(DEPENDCOMMAND) $(INCLUDEDIR) $(EXTRA_INC) $(EXTRA_DEFINE) $(EXTRA_CCOPTS) *.cu >> $(OSTYPE)/.Depend ; \
386+ fi
387+
388+update:../Config/OptionControlFile
389+ maketool $(CLASSNAME) $(OBJECTNAME) update
390+
391+changeName::
392+
393+Test:$(OSTYPE)/$(OBJECTNAME) TestDir
394+ @if [ -f test/Makefile ] ; \
395+ then \
396+ cd test; make ; \
397+ else \
398+ echo "No test Makefile"; \
399+ fi
400+
401+TestDir::
402+ @if [ ! -d test ] ; \
403+ then \
404+ echo "Creating test dir"; \
405+ mkdir test; \
406+ fi
407+ @if [ ! -f test/Makefile ] ; \
408+ then \
409+ echo "Creating Makefile"; \
410+ cd test; \
411+ protoTestMakefileCreate; \
412+ fi
413+ @if [ ! -d test/data ]; \
414+ then \
415+ mkdir $(EOSHOME)/data/$(OBJECTNAME); \
416+ cd test; \
417+ ln -sf ../$(EOSHOME)/data/$(OBJECTNAME) data; \
418+ fi
419+
420+tar::
421+ cd $(DSTTAR); tar cvf Tools.$(CLASSNAME).$(OBJECTNAME).tar ../bin/$(OBJECTNAME) \
422+ ../bin/*/$(OBJECTNAME).* \
423+ ../src/Tools/$(CLASSNAME)/$(OBJECTNAME) \
424+ ; gzip Tools.$(CLASSNAME).$(OBJECTNAME).tar
425+
426+-include $(OSTYPE)/.Depend
427+-include ../Config/Target.inc
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64
@@ -0,0 +1 @@
1+../../../../../hostdepend/X86MAC64/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/X86MAC64
\ No newline at end of file
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/argCheck.c
@@ -0,0 +1,96 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include <string.h>
4+#include <math.h>
5+#include "../inc/config.h"
6+#include "genUtil.h"
7+#include "String.h"
8+#include "File.h"
9+#include "Memory.h"
10+
11+
12+void
13+argCheck(mrcImageMeanFreePathCalcInfo* info, int argc, char* argv[])
14+{
15+ long i;
16+ char s[1024];
17+ FILE* fpt;
18+
19+ if(NULL==(fpt=fopen(".EosLog", "a+"))) {
20+
21+ } else {
22+ for(i=0; i<argc; i++) {
23+ fprintf(fpt, "%s ", argv[i]);
24+ }
25+ fprintf(fpt, "\n");
26+ fclose(fpt);
27+ }
28+ for(i=1; i<argc; i++) {
29+ if(OPTION_FLAG==argv[i][OPTION_FLAG_POS]) {
30+ SSWITCH(argv[i]+OPTION_POS)
31+ SCASE("i") {
32+ if(i+1<argc) {
33+ info->In = stringGetNthWord(argv[i+1], 1, " ,");
34+ i++;
35+ info->flagIn++;
36+ } else {
37+ usage(argv[0]);
38+ exit(EXIT_FAILURE);
39+ }
40+ SBREAK;
41+ }
42+ SCASE("o") {
43+ if(i+1<argc) {
44+ info->Out = stringGetNthWord(argv[i+1], 1, " ,");
45+ i++;
46+ info->flagOut++;
47+ } else {
48+ usage(argv[0]);
49+ exit(EXIT_FAILURE);
50+ }
51+ SBREAK;
52+ }
53+ SCASE("c") {
54+ if(i+1<argc) {
55+ info->configFile = stringGetNthWord(argv[i+1], 1, " ,");
56+ i++;
57+ info->flagconfigFile++;
58+ } else {
59+ usage(argv[0]);
60+ exit(EXIT_FAILURE);
61+ }
62+ SBREAK;
63+ }
64+ SCASE("m") {
65+ if(i+1<argc) {
66+ info->mode = stringGetNthIntegerData(argv[i+1], 1, " ,");
67+ i++;
68+ info->flagmode++;
69+ } else {
70+ usage(argv[0]);
71+ exit(EXIT_FAILURE);
72+ }
73+ SBREAK;
74+ }
75+ SCASE("h") {
76+ usage(argv[0]);
77+ exit(EXIT_SUCCESS);
78+ break;
79+ }
80+ SCASE("html") {
81+ htmlBeforeUsage(argv[0]);
82+ usage(argv[0]);
83+ htmlAfterUsage(argv[0]);
84+ exit(EXIT_SUCCESS);
85+ break;
86+ }
87+ SDEFAULT {
88+ fprintf(stderr, "Not Supported Options: :%s\n", argv[i]);
89+ usage(argv[0]);
90+ exit(EXIT_FAILURE);
91+ break;
92+ }
93+ SSWITCHEND;
94+ }
95+ }
96+}
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/init.c
@@ -0,0 +1,86 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include <string.h>
4+#include <math.h>
5+#include "../inc/config.h"
6+#include "genUtil.h"
7+#include "String.h"
8+#include "File.h"
9+#include "Memory.h"
10+
11+
12+void
13+init0(mrcImageMeanFreePathCalcInfo* info)
14+{
15+ info->fptIn = NULL; info->flagIn = 0;
16+ info->fptOut = stdout; info->flagOut = 0;
17+ info->fptconfigFile = NULL; info->flagconfigFile = 0;
18+ info->mode = 0; info->flagmode = 0;
19+}
20+
21+void
22+init1(mrcImageMeanFreePathCalcInfo* info)
23+{
24+ char s[1024];
25+ int i;
26+ if(!info->flagIn) {
27+ stringGetFromFile(s, "In", stdin, stdout, 0);
28+ info->In = stringGetNthWord(s, 1, " ,\t");
29+ info->flagIn++;
30+ }
31+ if(info->flagIn) {
32+ info->fptIn = fileOpen(info->In, "r");
33+ }
34+
35+ if(info->flagOut) {
36+ info->fptOut = fileOpen(info->Out, "w");
37+ }
38+
39+ if(info->flagconfigFile) {
40+ info->fptconfigFile = fileOpen(info->configFile, "r");
41+ }
42+
43+ if(info->flagmode) {
44+ }
45+
46+}
47+#ifdef KHOROS
48+#include <stdio.h>
49+#include "bootstrap.h"
50+#include "dataserv.h"
51+#include "datamanip.h"
52+extern void func_usage_additions(void);
53+extern void func_free_args(kexit_status status, kaddr client_data);
54+extern void func_get_args(kform* pane);
55+
56+void
57+func_usage_additions(void)
58+{
59+}
60+void
61+func_free_args(kexit_status status, kaddr client_data)
62+{
63+}
64+void
65+func_get_args(kform* pane)
66+{
67+}
68+void
69+khorosInit(int argc, char* argv[])
70+{
71+ char* eospath;
72+ char panepath[1024];
73+ FILE* fpt;
74+
75+ eospath = getenv("EOS_HOME");
76+ sprintf(panepath, "%s/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/mrcImageMeanFreePathCalc.pane", eospath);
77+ khoros_initialize(argc, argv, "EOS");
78+ fpt = fopen(panepath, "r"); if(NULL!=fpt) {
79+ fclose(fpt);
80+ kclui_initialize(panepath, KGEN_NONE, "EOS", "mrcImageMeanFreePathCalc",
81+ func_usage_additions,
82+ func_get_args,
83+ func_free_args);
84+ }
85+}
86+#endif /* KHOROS */
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/mrcImageMeanFreePathCalc.c
@@ -0,0 +1,235 @@
1+/*
2+# mrcImageMeanFreePathCalc : $Revision$
3+# $Date$
4+# Created by $Author$
5+# Usage : mrcImageMeanFreePathCalc
6+# Attention
7+# $Loccker$
8+# $State$
9+#
10+*/
11+#include <stdio.h>
12+#include <stdlib.h>
13+#include <string.h>
14+#include <math.h>
15+#define GLOBAL_DECLARATION
16+#include "../inc/config.h"
17+
18+#define DEBUG
19+#include "genUtil.h"
20+#include "mrcImage.h"
21+#include "Memory.h"
22+
23+typedef struct lmrcImageMeanFreePathCalcInfo {
24+ int N;
25+ int* countWhite;
26+ int* countBlack;
27+ int* countWhiteEdge;
28+ int* countBlackEdge;
29+} lmrcImageMeanFreePathCalcInfo;
30+
31+typedef enum lmrcImageMeanFreePathCalcMode {
32+ MeanFreePathCalcModeAlongZaxis=0,
33+} lmrcImageMeanFreePathCalcMode;
34+
35+extern void lmrcImageMeanFreePathCalcPrint(FILE* fpt, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode);
36+extern void lmrcImageMeanFreePathCalc(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode);
37+extern void lmrcImageMeanFreePathCalcAlongZaxis(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode);
38+
39+extern void lmrcImageMeanFreePathCalcModePrint(FILE* fpt);
40+
41+int
42+main(int argc, char* argv[])
43+{
44+ mrcImageMeanFreePathCalcInfo info;
45+ lmrcImageMeanFreePathCalcInfo linfo;
46+ mrcImage in;
47+
48+ init0(&info);
49+ argCheck(&info, argc, argv);
50+ init1(&info);
51+
52+ DEBUGPRINT("Program Start\n");
53+
54+ mrcFileRead(&in, info.In, "in main", 0);
55+
56+ lmrcImageMeanFreePathCalc(&in, &linfo, info.mode);
57+
58+ lmrcImageMeanFreePathCalcPrint(info.fptOut, &linfo, info.mode);
59+
60+ exit(EXIT_SUCCESS);
61+}
62+
63+void
64+additionalUsage()
65+{
66+ fprintf(stderr, "----- Additional Usage -----\n");
67+ lmrcImageMeanFreePathCalcModePrint(stderr);
68+}
69+
70+
71+void
72+lmrcImageMeanFreePathCalcModePrint(FILE* fpt)
73+{
74+ fprintf(fpt, "%d: AlongZ-axis\n", MeanFreePathCalcModeAlongZaxis);
75+}
76+
77+void
78+lmrcImageMeanFreePathCalc(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode)
79+{
80+ switch(mode) {
81+ case MeanFreePathCalcModeAlongZaxis: {
82+ lmrcImageMeanFreePathCalcAlongZaxis(in, linfo, mode);
83+ break;
84+ }
85+ default: {
86+ fprintf(stderr, "Not supported mode: %d\n", mode);
87+ exit(EXIT_FAILURE);
88+ break;
89+ }
90+ }
91+
92+}
93+
94+void
95+lmrcImageMeanFreePathCalcPrint(FILE* fpt, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode)
96+{
97+ int i;
98+ for(i=0; i<=linfo->N; i++) {
99+ fprintf(fpt, "%4d %6d %6d %6d %6d %6.3f %6.3f %6.3f %6.3f\n",
100+ i,
101+ linfo->countWhite[i], linfo->countBlack[i],
102+ linfo->countWhiteEdge[i], linfo->countBlackEdge[i],
103+ linfo->countWhite[i]/(double)linfo->countWhite[0]*100, linfo->countBlack[i]/(double)linfo->countBlack[0]*100,
104+ linfo->countWhiteEdge[i]/(double)linfo->countWhiteEdge[0]*100, linfo->countBlackEdge[i]/(double)linfo->countBlackEdge[0]*100);
105+ }
106+}
107+
108+
109+void
110+lmrcImageMeanFreePathCalcAlongZaxis(mrcImage* in, lmrcImageMeanFreePathCalcInfo* linfo, lmrcImageMeanFreePathCalcMode mode)
111+{
112+ int* countBlack;
113+ int* countWhite;
114+ int* countBlackEdge;
115+ int* countWhiteEdge;
116+ int x, y, z;
117+ int flagEdge;
118+ double data;
119+ double prevData;
120+ int lengthWhite;
121+ int lengthBlack;
122+
123+ countBlack = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
124+ countWhite = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
125+ countBlackEdge = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
126+ countWhiteEdge = memoryAllocate(sizeof(int)*(in->HeaderN.z+1), "in lmrcImageMeanFreePathCalc");
127+
128+ linfo->countBlack = countBlack;
129+ linfo->countWhite = countWhite;
130+ linfo->countBlackEdge = countBlackEdge;
131+ linfo->countWhiteEdge = countWhiteEdge;
132+ linfo->N = in->HeaderN.z;
133+
134+ for(y=0; y<in->HeaderN.y; y++) {
135+ for(x=0; x<in->HeaderN.x; x++) {
136+ flagEdge = 1;
137+ lengthWhite = 0;
138+ lengthBlack = 0;
139+
140+ // Start
141+ mrcPixelDataGet(in, x, y, 0, &data, mrcPixelRePart, mrcPixelHowNearest);
142+ if(0<data) {
143+ countWhiteEdge[0]++;
144+ lengthWhite++;
145+ } else {
146+ countBlackEdge[0]++;
147+ lengthBlack++;
148+ }
149+ prevData = data;
150+
151+ // Interval
152+ for(z=1; z<in->HeaderN.z-1; z++) {
153+ mrcPixelDataGet(in, x, y, z, &data, mrcPixelRePart, mrcPixelHowNearest);
154+ if(0<prevData) {
155+ if(0<data) { // White continue
156+ if(flagEdge) {
157+ countWhiteEdge[0]++;
158+ } else {
159+ countWhite[0]++;
160+ }
161+ lengthWhite++;
162+ } else { // White -> Black
163+ if(flagEdge) {
164+ countWhiteEdge[lengthWhite]++;
165+ flagEdge=0;
166+ } else {
167+ countWhite[lengthWhite]++;
168+ }
169+ countBlack[0]++;
170+ lengthWhite=0;
171+ lengthBlack++;
172+ }
173+ } else {
174+ if(0<data) { // Black -> White
175+ if(flagEdge) {
176+ countBlackEdge[lengthBlack]++;
177+ flagEdge=0;
178+ } else {
179+ countBlack[lengthBlack]++;
180+ }
181+ countWhite[0]++;
182+ lengthBlack=0;
183+ lengthWhite++;
184+ } else { // Black continue
185+ if(flagEdge) {
186+ countBlackEdge[0]++;
187+ } else {
188+ countBlack[0]++;
189+ }
190+ lengthBlack++;
191+ }
192+ }
193+ prevData = data;
194+ }
195+
196+ // End
197+ mrcPixelDataGet(in, x, y, in->HeaderN.z-1, &data, mrcPixelRePart, mrcPixelHowNearest);
198+
199+ if(0<prevData) {
200+ if(0<data) { // White continue
201+ lengthWhite++;
202+ countWhiteEdge[lengthWhite]++;
203+ countWhiteEdge[0]++;
204+ } else { // White -> Black
205+ if(flagEdge) {
206+ countWhiteEdge[lengthWhite]++;
207+ } else {
208+ countWhite[lengthWhite]++;
209+ }
210+ countBlackEdge[1]++;
211+ countBlackEdge[0]++;
212+ }
213+ } else {
214+ if(0<data) { // Black -> White
215+ if(flagEdge) {
216+ countBlackEdge[lengthBlack]++;
217+ } else {
218+ countBlack[lengthBlack]++;
219+ }
220+ countWhiteEdge[1]++;
221+ countWhiteEdge[0]++;
222+ } else { // Black continue
223+ lengthBlack++;
224+ if(flagEdge) {
225+ countBlackEdge[lengthBlack]++;
226+ countBlackEdge[0]++;
227+ } else {
228+ countBlack[lengthBlack]++;
229+ countBlack[0]++;
230+ }
231+ }
232+ }
233+ }
234+ }
235+}
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/mrcImageMeanFreePathCalc.html
@@ -0,0 +1,19 @@
1+<HTML>
2+<HEAD>
3+<TITLE>mrcImageMeanFreePathCalc</TITLE>
4+</HEAD>
5+<BODY>
6+<H1>mrcImageMeanFreePathCalc</H1>
7+<H2>Usage</H2>
8+<PRE>
9+Usage: mrcImageMeanFreePathCalc
10+Options:
11+ [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage
12+ [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output:distribution
13+ [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
14+ [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
15+----- Additional Usage -----
16+0: AlongZ-axis
17+</PRE>
18+</BODY>
19+</HTML>
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/mrcImageMeanFreePathCalc.pane
@@ -0,0 +1,16 @@
1+-F 4.3 1 0 52x1+0+0 +0+0 'Cantata' cantata
2+ -M 1 1 52x1+0+0 +1+0 ' ' subform
3+ -P 1 0 52x1+0+1 +0+0 ' ' mrcImageMeanFreePathCalc
4+ -D 1 0 9x1+0+0 'Options' _gui_options
5+ -H 1 6x1+0+0 'License' 'license' $BOOTSTRAP/repos/license/License license
6+ -E
7+ -R 1 0 1 5x1+35+0 'Run' 'execute operation' $EOS/bin/mrcImageMeanFreePathCalc
8+ -H 1 5x1+41+0 'Help' 'help page' $EOS/src/Tools/mrcImage/mrcImageMeanFreePathCalc/doc/mrcImageMeanFreePathCalc.doc help
9+ -Q 1 0 5.25x1+47+0 'Close'
10+ -I 1 0 1 1 0 1 -1x1+1+1.500000 ' ' 'In' 'Input:mrcImage' i
11+ -O 1 0 1 0 0 1 -1x1+1+3.000000 ' ' 'Out' 'Output:distribution' o
12+ -I 1 0 1 0 0 1 -1x1+1+4.500000 ' ' 'configFile' 'ConfigurationFile' c
13+ -i 1 0 1 0 0 -1x1+1+6.000000 0 0 0 0 0 'mode' 'Mode' m
14+ -E
15+ -E
16+-E
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/usage.c
@@ -0,0 +1,36 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include "../inc/config.h"
4+
5+void
6+usage(char* thisProgram)
7+{
8+ fprintf(stderr, "Usage: %s\n", thisProgram);
9+ fprintf(stderr, "Options:\n");
10+ fprintf(stderr, " [-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input:mrcImage\n");
11+ fprintf(stderr, " [-o[utput] Out (stdout ).as(outFile::ASCII ) ] :Optional :Output:distribution\n");
12+ fprintf(stderr, " [-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile\n");
13+ fprintf(stderr, " [-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode\n");
14+ additionalUsage();
15+}
16+
17+void
18+htmlBeforeUsage(char* thisProgram)
19+{
20+ fprintf(stderr, "<HTML>\n");
21+ fprintf(stderr, "<HEAD>\n");
22+ fprintf(stderr, "<TITLE>%s</TITLE>\n", thisProgram);
23+ fprintf(stderr, "</HEAD>\n");
24+ fprintf(stderr, "<BODY>\n");
25+ fprintf(stderr, "<H1>%s</H1>\n", thisProgram);
26+ fprintf(stderr, "<H2>Usage</H2>\n");
27+ fprintf(stderr, "<PRE>\n");
28+}
29+
30+void
31+htmlAfterUsage(char* thisProgram)
32+{
33+ fprintf(stderr, "</PRE>\n");
34+ fprintf(stderr, "</BODY>\n");
35+ fprintf(stderr, "</HTML>\n");
36+}
--- /dev/null
+++ b/src/Tools/mrcImage/mrcImageMeanFreePathCalc/src/util.c
@@ -0,0 +1,4 @@
1+#include <stdio.h>
2+#include <stdlib.h>
3+#include "../inc/config.h"
4+
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